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From my experience the 12V rail (on the picopsu) has never had enough current on it to run 3.5" drives. Typically 2.5" drives are more limited in their capacity than 3.5" 'standard' drives and especially for a HTPC the more space the better.

Please do not consider 3.5" drives, they are so out of scope for the EFIKA (they will draw 25-30x the power of the entire base system! What is the point of using a 1.08W board then?) and you CANNOT connect one to the internal 44pin connector for some VERY good technical reasons (no strange adapter cables please, due to the design of the MPC5200B, and the sharing of IO pins, ATA connector length has to be less than a certain size; the connector we have on the board fulfils this requirement)
If you are planning an ATA card in there or something to drive these disks, then you will obviously need to spec for it. But don't think about the internal ATA.
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These are the specs im looking at.
3.3V 3-5A (enough for the most power hungry cards)
5V 3-5A (USB devices do consume a bit of power)
12V 2A+ (The more the merrier)
(though 3A is seen as nominal supply current)
However I'm not quite sure about the needed current on the -12V rail
This depends on your PCI card, how old it is etc. - nothing on the board is connected to -12 unless you plug in a PCI card that has that connected. Some cards which do real video output (RF, SVideo, RGB) have line drivers which require symmetric +12 and -12 supplies. Most newer ones do not, however this is a decision of the guy designing the card.
For most normal usage; just use +3, +5, +12, ignore the other unless you have a special requirement on PCI.
The best way to spec a power supply and your requirements is to test; grab an EFIKA, plug all your devices in, and get your multimeter out and start looking at how the ATX connector is wired. You will get accurate load readouts there.